This is a legacy document
This page has been deprecated and is no longer updated. The current version of the Cytoscape manual can be found at http://manual.cytoscape.org/
Cytoscape @version@ is the latest version of Cytoscape, building upon the new architecture, developer API and set of user controls established in the 3.x series. If you're familiar with former versions of Cytoscape, this version will feel completely familiar and you'll be all set to go. In future releases, we will continue to tweak and improve both the software and the documentation. This manual will be updated to reflect all the latest changes.
This manual describes the installation and use of Cytoscape. For a more thorough understanding of Cytoscape and its ecosystem, we highly recommend reading the Welcome Letter accessible on the http://cytoscape.org website.